Schedule for Single-cell RNA-seq workshop
Day 1
| Time | Topic | Instructor |
|---|---|---|
| 09:00 - 09:15 | Workshop introduction | Radhika |
| 09:15 - 09:45 | Introduction to scRNA-seq | Mary |
| 09:45 - 10:30 | Single-cell RNA-seq design and methods | Dr. Sarah Boswell |
| 10:30 - 10:45 | Break | |
| 10:45 - 11:30 | Single-cell RNA-seq design and methods (cont.) | Dr. Sarah Boswell |
| 11:30 - 12:00 | Raw data to count matrix | Mary |
| 12:00 - 13:00 | Lunch | |
| 13:00 - 13:45 | R Refresher | Radhika |
| 13:45 - 14:45 | Quality control set-up | Jihe |
| 14:45 - 15:00 | Break | |
| 15:00 - 16:30 | Quality control | Mary |
Day 2
| Time | Topic | Instructor |
|---|---|---|
| 09:00 - 09:45 | Theory of Normalization and PCA | Radhika |
| 09:45 - 10:45 | Normalization and Integration | Mary |
| 10:45 - 11:00 | Break | |
| 11:00 - 11:45 | Normalization and Integration | Mary |
| 11:45 - 12:45 | Clustering | Radhika |
| 12:45 - 13:45 | Lunch | |
| 13:45 - 15:00 | Clustering quality control | Mary |
| 15:00 - 15:15 | Break | |
| 15:15 - 16:45 | Marker identification | Jihe |
| 16:45 - 17:00 | Wrap up | Radhika |