Workshop Schedule

Day 1

Time Topic Instructor
09:00 - 10:00 Overview of DGE Analysis Workflow Meeta
10:00 - 10:15 Break  
10:15 - 11:00 Setting up for DGE Analysis: Count Normalization Radhika
11:00 - 12:00 Setting up for DGE Analysis: Count Data QC Meeta
12:00 - 13:00 Lunch  
13:00 - 13:30 Setting up for DGE Analysis: Count Data QC cont’d Meeta
13:30 - 14:30 Overview of DESeq2 Methods Mary
14:30 - 15:15 DGE Analysis: Pairwise Comparisons (Wald Test) Meeta
15:15 - 15:30 Break  
15:30 - 17:00 DGE Results Summarization and Visualization Radhika

Day 2

Time Topic Instructor
09:00 - 9:15 DGE Workflow Summary Mary
9:15 - 10:15 DGE Analysis: Complex Experimental Designs (LRT) Meeta
10:15 - 10:30 Break  
10:30 - 12:15 Functional Analysis Mary
12:15 - 12:30 Wrap up Radhika

Practice exercises & Answer Key