In this exercise we will use the VCF file that we have generated in order to practice parsing our apart our VCF. The VCF file is also availible for download here.
Exercises
1) Extract all of the stop codon losses
2) Extract all of the SNPs on Chromosome 2 between 8Mb and 10.2Mb.
3) Extract all of the mutations that alter a splice site on Chromosome 11.
4) Extract all of the high impact mutations on Chromosome 12 or moderate impact mutations on Chromosome 3.