SnpEff: Variant analysis

Contents Summary
Variant rate by chromosome
Variants by type
Number of variants by impact
Number of variants by functional class
Number of variants by effect
Quality histogram
InDel length histogram
Base variant table
Transition vs transversions (ts/tv)
Allele frequency
Allele Count
Codon change table
Amino acid change table
Chromosome variants plots
Details by gene

Summary

Genome GRCh38.p7.RefSeq

Date 2024-05-13 09:54

SnpEff version
SnpEff 4.3g (build 2016-11-28 08:31), by Pablo Cingolani

Command line arguments
SnpEff -cancer -csvStats /n/groups/hbctraining/variant_calling/workshop_runthrough/reports/snpeff/annotation_mutect2_syn3_normal_syn3_tumor_GRCh38.p7-effects-stats.csv -s /n/groups/hbctraining/variant_calling/workshop_runthrough/reports/snpeff/annotation_mutect2_syn3_normal_syn3_tumor_GRCh38.p7-effects-stats.html GRCh38.p7.RefSeq /n/scratch/users/w/wig051/variant_calling/vcf_files/mutect2_syn3_normal_syn3_tumor_GRCh38.p7-pass-filt-LCR.pedigree_header.vcf

Warnings 1,156

Errors 0

Number of lines (input file) 1,362

Number of variants (before filter) 1,362

Number of not variants
(i.e. reference equals alternative) 0

Number of variants processed
(i.e. after filter and non-variants) 1,362

Number of known variants
(i.e. non-empty ID) 0 ( 0% )

Number of multi-allelic VCF entries
(i.e. more than two alleles) 0

Number of effects 13,229

Genome total length 3,232,546,710

Genome effective length 3,031,607,288

Variant rate 1 variant every 2,225,849 bases

Variants rate details

Chromosome Length Variants Variants rate

1 248,956,422 124 2,007,713

2 242,193,529 116 2,087,875

3 198,295,559 71 2,792,895

4 190,214,555 50 3,804,291

5 181,538,259 49 3,704,862

6 170,805,979 60 2,846,766

7 159,345,973 69 2,309,361

8 145,138,636 46 3,155,187

9 138,394,717 64 2,162,417

10 133,797,422 53 2,524,479

11 135,086,622 78 1,731,879

12 133,275,309 76 1,753,622

13 114,364,328 32 3,573,885

14 107,043,718 56 1,911,494

15 101,991,189 51 1,999,827

16 90,338,345 50 1,806,766

17 83,257,441 83 1,003,101

18 80,373,285 30 2,679,109

19 58,617,616 62 945,445

20 64,444,167 51 1,263,611

21 46,709,983 11 4,246,362

22 50,818,468 27 1,882,165

HSCHR14_CTG7_UNLOCALIZED 172,810 1 172,810

HSCHRUN_RANDOM_124 392,061 1 392,061

X 156,040,895 51 3,059,625

Total 3,031,607,288 1,362 2,225,849

Chromosome	Length	Variants	Variants rate
1	248,956,422	124	2,007,713
2	242,193,529	116	2,087,875
3	198,295,559	71	2,792,895
4	190,214,555	50	3,804,291
5	181,538,259	49	3,704,862
6	170,805,979	60	2,846,766
7	159,345,973	69	2,309,361
8	145,138,636	46	3,155,187
9	138,394,717	64	2,162,417
10	133,797,422	53	2,524,479
11	135,086,622	78	1,731,879
12	133,275,309	76	1,753,622
13	114,364,328	32	3,573,885
14	107,043,718	56	1,911,494
15	101,991,189	51	1,999,827
16	90,338,345	50	1,806,766
17	83,257,441	83	1,003,101
18	80,373,285	30	2,679,109
19	58,617,616	62	945,445
20	64,444,167	51	1,263,611
21	46,709,983	11	4,246,362
22	50,818,468	27	1,882,165
HSCHR14_CTG7_UNLOCALIZED	172,810	1	172,810
HSCHRUN_RANDOM_124	392,061	1	392,061
X	156,040,895	51	3,059,625
Total	3,031,607,288	1,362	2,225,849

Number variantss by type

Type Total

SNP 729

MNP 7

INS 327

DEL 299

MIXED 0

INV 0

DUP 0

BND 0

INTERVAL 0

Total 1,362

Type	Total
SNP	729
MNP	7
INS	327
DEL	299
MIXED	0
INV	0
DUP	0
BND	0
INTERVAL	0
Total	1,362

Number of effects by impact

Type (alphabetical order) Count Percent

HIGH 495 3.742%

LOW 379 2.865%

MODERATE 712 5.382%

MODIFIER 11,643 88.011%

Type (alphabetical order)	Count	Percent
HIGH	495	3.742%
LOW	379	2.865%
MODERATE	712	5.382%
MODIFIER	11,643	88.011%

Number of effects by functional class

Type (alphabetical order) Count Percent

MISSENSE 559 72.692%

NONSENSE 12 1.56%

SILENT 198 25.748%

Type (alphabetical order)	Count	Percent
MISSENSE	559	72.692%
NONSENSE	12	1.56%
SILENT	198	25.748%

Missense / Silent ratio: 2.8232

Number of effects by type and region

Type Region

Type (alphabetical order) Count Percent

3_prime_UTR_variant 573 4.219%

5_prime_UTR_premature_start_codon_gain_variant 9 0.066%

5_prime_UTR_variant 213 1.568%

conservative_inframe_deletion 56 0.412%

conservative_inframe_insertion 40 0.295%

disruptive_inframe_deletion 29 0.214%

disruptive_inframe_insertion 27 0.199%

downstream_gene_variant 1,104 8.129%

frameshift_variant 381 2.805%

intergenic_region 51 0.376%

intragenic_variant 12 0.088%

intron_variant 8,799 64.789%

missense_variant 549 4.042%

non_coding_transcript_exon_variant 299 2.202%

non_coding_transcript_variant 3 0.022%

sequence_feature 62 0.457%

splice_acceptor_variant 57 0.42%

splice_donor_variant 32 0.236%

splice_region_variant 178 1.311%

start_lost 9 0.066%

stop_gained 81 0.596%

stop_lost 1 0.007%

structural_interaction_variant 8 0.059%

synonymous_variant 198 1.458%

upstream_gene_variant 810 5.964%

Type (alphabetical order) Count Percent

DOWNSTREAM 1,104 8.345%

EXON 1,584 11.974%

INTERGENIC 51 0.386%

INTRON 8,587 64.91%

SPLICE_SITE_ACCEPTOR 57 0.431%

SPLICE_SITE_DONOR 24 0.181%

SPLICE_SITE_REGION 140 1.058%

TRANSCRIPT 77 0.582%

UPSTREAM 810 6.123%

UTR_3_PRIME 573 4.331%

UTR_5_PRIME 222 1.678%

Quality:

Insertions and deletions length:

	
		 Min 0  
		 Max 69  
		 Mean 6.45  
		 Median 1  
		 Standard deviation 9.934  
		 Values 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,26,27,28,29,30,31,32,34,36,37,38,39,40,41,43,44,45,46,48,69  
		 Count 26,322,21,26,25,19,11,13,15,11,9,12,6,13,7,5,9,2,3,3,5,3,4,5,7,1,6,2,3,1,6,2,1,1,2,3,4,2,3,2,1,1,1,1,1

Min	0
Max	69
Mean	6.45
Median	1
Standard deviation	9.934
Values	0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,26,27,28,29,30,31,32,34,36,37,38,39,40,41,43,44,45,46,48,69
Count	26,322,21,26,25,19,11,13,15,11,9,12,6,13,7,5,9,2,3,3,5,3,4,5,7,1,6,2,3,1,6,2,1,1,2,3,4,2,3,2,1,1,1,1,1

Base changes (SNPs)

A C G T

A 0 60 69 61

C 58 0 55 61

G 54 65 0 54

T 60 67 65 0

	A	C	G	T
A	0	60	69	61
C	58	0	55	61
G	54	65	0	54
T	60	67	65	0

Ts/Tv (transitions / transversions)

Note: Only SNPs are used for this statistic.
Note: This Ts/Tv ratio is a 'raw' ratio (ratio of observed events).

Transitions	251
Transversions	478
Ts/Tv ratio	0.5251

All variants:

Sample ,syn3_normal,syn3_tumor,Total
Transitions ,0,251,251
Transversions ,0,478,478
Ts/Tv ,NaN,0.525,0.525

Only known variants (i.e. the ones having a non-empty ID field):

No results available (empty input?)

Allele frequency

Min	25
Max	25
Mean	25
Median	25
Standard deviation	0
Values	25
Count	1362

Allele Count

Min	1
Max	1
Mean	1
Median	1
Standard deviation	0
Values	1
Count	1362

Hom/Het per sample

Sample_names , syn3_normal, syn3_tumor
Reference , 1362, 0
Het , 0, 1362
Hom , 0, 0
Missing , 0, 0

Codon changes

How to read this table:
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

- AAA AAC AAG AAT ACA ACC ACG ACT AGA AGC AGG AGT ATA ATC ATG ATT CAA CAC CAG CAT CCA CCC CCG CCT CGA CGC CGG CGT CTA CTC CTG CTT GAA GAC GAG GAT GCA GCC GCG GCT GGA GGC GGG GGT GTA GTC GTG GTT TAA TAC TAG TAT TCA TCC TCG TCT TGA TGC TGG TGT TTA TTC TTG TTT

- 7 3 12 9 4 14 37 14 1 30 1 24 49 7 43 27 8 35 13 21 21 27 21 9 21 8 27 11 18 6 16 19 26 21 10 24 30 28 39 42 18 34 16 5 21 27 2 12 59 26 4 22 26 7 18 28 16 42 28 52 28 3 34

AAA 12 6 10 19 1

AAC 3 3 49 4 1 2 2

AAG 42 2 7 3 2 10 14 7

AAT 7 12 2 5

ACA 16

ACC 1 17 3

ACG

ACT 2 4

AGA 4 2 11 2 1

AGC 17 2 4 3 1

AGG 2

AGT 23 7 10

ATA 3 4 12

ATC 21 2 9 18

ATG 1 6 1 27 1

ATT 7 5 1

CAA 3

CAC 10 9 19 24

CAG 57 30 11 11

CAT 5 3 10

CCA 26 11 2 12 1

CCC 4 13

CCG

CCT 24 1 15 1 3

CGA 12 12

CGC 1 1

CGG 4

CGT 2 27

CTA 22 27

CTC 11 1 6 9

CTG 63 1 1 8 2 16

CTT 45 1 9 2

GAA 19 27 8 2

GAC 2 1 2 10 1 1

GAG 50 1 8 6 5 3 16

GAT 21 8

GCA 11

GCC 21 3 1

GCG 17 2 1 9

GCT 5 5 1 27 3 4

GGA 24 12 4

GGC 11 6 5 14 2

GGG 19 4

GGT 5 2

GTA 1 4 5

GTC 14 1 2

GTG 42 8 9 5 6

GTT 8 33

TAA

TAC 5 1 3 1

TAG 1

TAT 17 1 4 2

TCA 12 16 16

TCC 27 5 5

TCG 8

TCT 14 1 5 11 1

TGA

TGC 1 2 14 2

TGG 3 2 3

TGT 9 8

TTA 13

TTC 23 1

TTG 15 5 6

TTT 5 1 9 6

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

* - ? A C D E F G H I K L M N P Q R S T V W Y

* 1

- 66 204 139 44 45 36 62 73 56 83 19 114 43 12 78 21 69 127 69 50 42 63

?

A 54 31 3 1 5 3 9 4

C 10 2 14 10

D 23 10 2 1 1 9

E 69 8 5 27 5 1 6 8 16

F 28 1 16

G 59 2 2 6 9 12 14 4

H 5 10 10 12 19 24

I 31 18 9 1 9 14

K 8 54 19 18 10 10 14 2

L 169 9 1 38 29 1 16

M 1 27 6 1 1

N 10 5 15 51 2 1 4 2

P 54 1 3 41 2 1 11

Q 60 41 11

R 11 28 2 1 2 12 23 2

S 5 101 5 15 16 3 2 5 24 1 11

T 3 1 18 17 4

V 65 9 9 5 6 44

W 3 3 2

Y 4 22 2 1 1 4

Variants by chromosome

		

		1, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000,171000000,172000000,173000000,174000000,175000000,176000000,177000000,178000000,179000000,180000000,181000000,182000000,183000000,184000000,185000000,186000000,187000000,188000000,189000000,190000000,191000000,192000000,193000000,194000000,195000000,196000000,197000000,198000000,199000000,200000000,201000000,202000000,203000000,204000000,205000000,206000000,207000000,208000000,209000000,210000000,211000000,212000000,213000000,214000000,215000000,216000000,217000000,218000000,219000000,220000000,221000000,222000000,223000000,224000000,225000000,226000000,227000000,228000000,229000000,230000000,231000000,232000000,233000000,234000000,235000000,236000000,237000000,238000000,239000000,240000000,241000000,242000000,243000000,244000000,245000000,246000000,247000000,248000000
1,Count,0,3,0,0,0,0,5,0,0,0,1,2,1,1,0,2,2,0,0,0,2,0,1,3,1,1,1,0,1,1,0,1,0,1,1,0,1,2,0,0,1,0,0,0,1,0,0,0,0,0,0,1,3,1,1,1,0,0,1,0,1,1,1,0,0,1,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,1,2,2,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,3,3,0,0,2,2,1,1,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,2,1,2,0,1,0,1,0,1,2,2,0,0,1,0,1,0,2,0,0,0,2,0,1,0,0,1,0,1,1,0,0,1,0,3,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,1,0,0,0,0,1,0,1,0,1,0,0,2,0,1,0,0,0,0,0,1,0,0,2,2,0,1,1,1,0,0,0,0,2,0,2,0,0,0,0,0,0,0,0,0,1,0

		

		2, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000,171000000,172000000,173000000,174000000,175000000,176000000,177000000,178000000,179000000,180000000,181000000,182000000,183000000,184000000,185000000,186000000,187000000,188000000,189000000,190000000,191000000,192000000,193000000,194000000,195000000,196000000,197000000,198000000,199000000,200000000,201000000,202000000,203000000,204000000,205000000,206000000,207000000,208000000,209000000,210000000,211000000,212000000,213000000,214000000,215000000,216000000,217000000,218000000,219000000,220000000,221000000,222000000,223000000,224000000,225000000,226000000,227000000,228000000,229000000,230000000,231000000,232000000,233000000,234000000,235000000,236000000,237000000,238000000,239000000,240000000,241000000,242000000
2,Count,0,0,0,0,0,0,0,0,1,2,2,1,0,0,1,1,0,0,0,0,1,0,0,0,1,0,2,0,0,1,0,2,0,2,1,0,0,2,1,1,0,0,0,3,2,0,0,0,1,0,1,0,0,2,0,1,0,0,1,0,1,0,0,0,1,1,0,0,1,0,2,3,1,1,4,0,0,0,0,1,0,0,0,0,1,2,0,0,1,0,0,0,0,0,0,0,1,2,0,0,1,3,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,1,0,1,1,0,0,0,1,1,0,1,3,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,2,1,0,0,0,0,0,0,0,0,1,2,0,1,0,0,0,0,1,2,0,0,0,0,1,0,0,3,1,0,1,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,3,1,0,0,0,0,3,0,1,0,1,0,0,0,0,1,0,0,1,1,0,0,0,0,0,0,0,0,0,1,2,1,1,0,0,0,1,0,1,0,4,2,0

		

		3, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000,171000000,172000000,173000000,174000000,175000000,176000000,177000000,178000000,179000000,180000000,181000000,182000000,183000000,184000000,185000000,186000000,187000000,188000000,189000000,190000000,191000000,192000000,193000000,194000000,195000000,196000000,197000000,198000000
3,Count,0,0,0,1,1,0,0,0,0,1,1,0,2,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,4,0,0,1,0,0,1,1,0,0,4,0,1,1,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,3,1,0,0,0,0,0,0,0,0,1,1,1,0,2,0,0,2,2,0,2,1,0,0,1,0,0,1,0,3,1,0,0,0,0,0,0,3,1,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,1,0,3,0,1,0,0,1,0,0,0,0,1,1,0,0,2,3,0,0,0,0,0,0,0,0,0,0,0,0,1,0

		

		4, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000,171000000,172000000,173000000,174000000,175000000,176000000,177000000,178000000,179000000,180000000,181000000,182000000,183000000,184000000,185000000,186000000,187000000,188000000,189000000,190000000
4,Count,1,1,1,0,1,0,1,0,2,1,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,1,0,0,1,0,0,0,0,0,0,0,0,0,1,1,0,0,1,0,0,0,0,0,2,0,0,1,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,2,1,0,0,0,0,1,0,1,0,1,1,0,0,0,1,0,1,0,0,0,2,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,1,1,0,1,0,0,0,0,0,0,0,0,2,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,1,0,1,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0

		

		5, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000,171000000,172000000,173000000,174000000,175000000,176000000,177000000,178000000,179000000,180000000,181000000
5,Count,1,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,1,0,0,2,0,0,1,2,0,0,1,0,0,1,0,0,0,1,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,0,0,1,1,0,0,0,1,1,0,0,0,1,0,1,1,0,0,3,0,2,2,0,0,0,0,2,0,0,2,1,1,1,0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,3,0,1,1,0,0,0,0,0,0,0,0,0,0

		

		6, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000,160000000,161000000,162000000,163000000,164000000,165000000,166000000,167000000,168000000,169000000,170000000
6,Count,1,0,0,0,1,0,0,0,0,0,0,1,0,1,0,0,0,1,4,0,0,0,0,0,1,1,0,1,0,0,0,0,0,0,0,2,2,0,0,2,0,2,1,1,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,1,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,1,3,1,0,1,0,0,0,0,1,0,0,0,1,1,0,0,0,0,2,0,0,0,2,0,0,0,1,1,0,2,0,0,0,1,0,0,0,1,0,0,1,0,0,2,0,0,0,1,0,0,2,1,0,1,0,0,0,1,1,0,0,0

		

		7, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000,157000000,158000000,159000000
7,Count,0,0,1,0,3,1,0,1,0,0,0,1,1,0,0,0,0,0,0,0,1,0,0,1,0,0,2,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,2,0,0,0,2,1,0,2,0,0,0,0,1,3,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,2,1,0,0,3,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,0,1,0,0,1,7,4,2,0,0,0,1,0,0,0,0,0,1,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,2,0,0,0,0,2,0,0,0,0,0,0,0,0,2,0,1,0,0,0,1,1,1,2,0

		

		8, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000
8,Count,1,0,0,1,0,0,0,1,0,0,0,1,1,0,0,0,0,1,0,1,0,1,1,0,0,0,0,0,3,0,1,0,0,0,0,0,0,0,1,0,0,4,0,0,0,0,0,1,0,0,0,0,0,0,0,1,2,0,1,0,1,0,0,1,0,0,1,0,2,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,1,0,0,0,3,0,0,2,1,1,1,0,0,0,0,0,0,0,0,1,0,0,0

		

		9, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000
9,Count,0,0,2,0,0,1,0,0,0,0,0,0,0,0,1,1,0,0,0,2,0,1,0,0,0,0,0,1,0,0,0,0,3,2,1,3,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,1,0,1,0,0,0,1,0,0,0,1,1,3,0,0,0,2,0,2,0,0,0,0,0,0,0,0,0,2,1,0,1,3,1,0,1,0,0,0,3,0,1,1,1,0,0,4,6,0,1,0,0,0,1,1,1,1,0

		

		10, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000
10,Count,0,1,0,0,1,1,0,0,0,0,0,0,2,2,0,0,0,2,0,1,0,0,0,2,1,1,2,1,1,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,2,1,0,0,0,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,3,1,1,0,1,0,0,0,0,1,0,0,0,0,0,0,1,0,1,0,0,1,1,0,3,1,0,0,0,1,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,2,1,0,2,0,0,1,0,0,0,0,0,0,2,0

		

		11, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000
11,Count,1,1,1,1,2,1,0,2,0,1,2,0,0,1,1,0,2,1,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,1,2,0,0,0,0,0,0,0,0,1,2,1,1,0,0,0,0,0,0,0,1,0,3,0,2,2,2,4,0,3,1,2,0,3,0,3,0,0,0,1,1,1,0,1,0,0,0,0,2,0,1,0,0,0,0,1,0,0,1,0,0,0,0,0,0,0,0,1,2,0,0,0,1,4,0,0,1,1,1,0,0,1,1,0,0,0,0,0,2,0,0,1,0,0,0,0,0,0,0,0,0

		

		12, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000
12,Count,0,0,1,0,1,1,4,1,0,1,1,0,0,0,0,0,0,0,0,1,1,0,0,0,0,2,0,1,0,1,0,1,0,0,0,0,0,0,0,1,2,0,0,1,0,1,0,1,1,0,2,0,1,3,0,0,1,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,1,0,0,0,0,0,0,1,0,1,0,0,0,0,1,3,1,0,1,1,1,4,3,0,1,4,0,0,2,0,0,2,0,1,2,7,0,0,0,0,0,0,0,0,2,0

		

		13, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000
13,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,1,1,1,0,0,1,0,0,0,1,0,0,1,0,1,1,0,1,1,0,1,0,0,0,0,1,2,2,0,2,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,0,0,3,0

		

		14, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000
14,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,4,5,0,0,0,0,0,1,1,1,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,0,0,0,0,3,1,2,2,0,1,0,3,0,3,2,0,1,1,0,0,1,0,0,0,0,0,0,0,0,0,1,0,2,0,0,0,0,0,0,2,2,1,3,5,0,0,0,0

		

		15, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000
15,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,3,1,1,0,0,0,2,1,2,0,1,0,0,1,1,1,0,1,1,0,1,0,1,0,1,1,0,2,3,0,1,2,1,2,0,1,0,1,1,2,2,1,1,0,0,0,0,1,0,1,1,0,0,0,0,0,0,0,0,1

		

		16, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000
16,Count,0,3,5,2,0,0,0,0,1,0,1,0,1,0,0,0,0,0,0,0,1,1,2,0,3,0,0,2,0,3,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,1,0,3,0,0,0,0,0,0,0,0,0,2,0,2,1,1,0,0,0,0,2,0,0,0,0,0,0,1,2,0,0,0,2,2,0

		

		17, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000
17,Count,0,1,1,2,1,1,0,4,2,1,1,0,0,0,0,0,2,1,1,0,0,0,0,0,0,0,0,1,3,2,3,0,0,0,1,2,0,0,0,2,4,2,3,2,1,3,0,3,0,0,1,0,0,0,0,1,0,2,1,0,1,1,0,3,1,0,0,1,1,0,0,0,0,0,1,5,3,0,1,1,1,4,4,0

		

		18, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000
18,Count,1,0,0,1,0,0,0,1,0,0,0,0,3,0,0,0,0,0,0,0,0,3,0,1,0,0,1,1,0,0,0,0,1,0,0,0,2,1,0,0,0,0,0,0,0,2,1,1,0,0,0,0,0,0,1,0,0,0,1,0,0,0,1,2,0,0,0,0,0,0,0,0,2,0,1,1,0,0,0,1,0

		

		19, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000
19,Count,1,3,2,3,1,0,2,0,3,2,1,2,2,0,3,1,1,0,1,1,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,1,1,0,2,0,3,0,4,2,1,0,2,1,2,3,1,3,2,0,0,1,0,1,1

		

		20, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000
20,Count,0,0,0,4,1,1,0,0,0,0,0,0,0,1,0,1,0,1,0,0,0,1,0,0,0,2,0,0,0,1,2,2,1,2,0,3,3,2,3,0,0,1,1,1,1,2,2,1,1,1,1,0,0,0,1,0,1,1,1,0,0,0,3,1,0

		

		21, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000
21,Count,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,2,3,0,0,0,0,1,0,0,0,0,0,0,0,0,1,1,0

		

		22, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000
22,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,0,3,1,0,0,0,2,0,0,0,0,2,0,1,1,0,0,2,0,0,2,2,1,1,0,1,1,2,1,0,0,0,1

		

		HSCHR14_CTG7_UNLOCALIZED, Position,0,1000,2000,3000,4000,5000,6000,7000,8000,9000,10000,11000,12000,13000,14000,15000,16000,17000,18000,19000,20000,21000,22000,23000,24000,25000,26000,27000,28000,29000,30000,31000,32000,33000,34000,35000,36000,37000,38000,39000,40000,41000,42000,43000,44000,45000,46000,47000,48000,49000,50000,51000,52000,53000,54000,55000,56000,57000,58000,59000,60000,61000,62000,63000,64000,65000,66000,67000,68000,69000,70000,71000,72000,73000,74000,75000,76000,77000,78000,79000,80000,81000,82000,83000,84000,85000,86000,87000,88000,89000,90000,91000,92000,93000,94000,95000,96000,97000,98000,99000,100000,101000,102000,103000,104000,105000,106000,107000,108000,109000,110000,111000,112000,113000,114000,115000,116000,117000,118000,119000,120000,121000,122000,123000,124000,125000,126000,127000,128000,129000,130000,131000,132000,133000,134000,135000,136000,137000,138000,139000,140000,141000,142000,143000,144000,145000,146000,147000,148000,149000,150000,151000,152000,153000,154000,155000,156000,157000,158000,159000,160000,161000,162000,163000,164000,165000,166000,167000,168000,169000,170000,171000,172000
HSCHR14_CTG7_UNLOCALIZED,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0

		

		HSCHRUN_RANDOM_124, Position,0,10000,20000,30000,40000,50000,60000,70000,80000,90000,100000,110000,120000,130000,140000,150000,160000,170000,180000,190000,200000,210000,220000,230000,240000,250000,260000,270000,280000,290000,300000,310000,320000,330000,340000,350000,360000,370000,380000,390000
HSCHRUN_RANDOM_124,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0

		

		X, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000,47000000,48000000,49000000,50000000,51000000,52000000,53000000,54000000,55000000,56000000,57000000,58000000,59000000,60000000,61000000,62000000,63000000,64000000,65000000,66000000,67000000,68000000,69000000,70000000,71000000,72000000,73000000,74000000,75000000,76000000,77000000,78000000,79000000,80000000,81000000,82000000,83000000,84000000,85000000,86000000,87000000,88000000,89000000,90000000,91000000,92000000,93000000,94000000,95000000,96000000,97000000,98000000,99000000,100000000,101000000,102000000,103000000,104000000,105000000,106000000,107000000,108000000,109000000,110000000,111000000,112000000,113000000,114000000,115000000,116000000,117000000,118000000,119000000,120000000,121000000,122000000,123000000,124000000,125000000,126000000,127000000,128000000,129000000,130000000,131000000,132000000,133000000,134000000,135000000,136000000,137000000,138000000,139000000,140000000,141000000,142000000,143000000,144000000,145000000,146000000,147000000,148000000,149000000,150000000,151000000,152000000,153000000,154000000,155000000,156000000
X,Count,0,0,0,0,0,0,0,0,0,0,0,2,0,1,0,1,0,1,1,0,0,0,0,1,0,0,0,0,0,0,2,0,0,0,0,0,1,0,0,0,0,1,0,0,1,0,0,2,1,1,1,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,1,1,2,1,0,2,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,0,1,0,1,0,0,1,1,0,2,0,0,0,0,0,0,1,3,1,0,0,2,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,1,0,0,0,0,0,2,0,0,2,0,0,0,0,1,1,0,0

Details by gene

Here you can find a tab-separated table.

Genome	GRCh38.p7.RefSeq
Date	2024-05-13 09:54
SnpEff version	SnpEff 4.3g (build 2016-11-28 08:31), by Pablo Cingolani
Command line arguments	SnpEff -cancer -csvStats /n/groups/hbctraining/variant_calling/workshop_runthrough/reports/snpeff/annotation_mutect2_syn3_normal_syn3_tumor_GRCh38.p7-effects-stats.csv -s /n/groups/hbctraining/variant_calling/workshop_runthrough/reports/snpeff/annotation_mutect2_syn3_normal_syn3_tumor_GRCh38.p7-effects-stats.html GRCh38.p7.RefSeq /n/scratch/users/w/wig051/variant_calling/vcf_files/mutect2_syn3_normal_syn3_tumor_GRCh38.p7-pass-filt-LCR.pedigree_header.vcf
Warnings	1,156
Errors	0
Number of lines (input file)	1,362
Number of variants (before filter)	1,362
Number of not variants (i.e. reference equals alternative)	0
Number of variants processed (i.e. after filter and non-variants)	1,362
Number of known variants (i.e. non-empty ID)	0 ( 0% )
Number of multi-allelic VCF entries (i.e. more than two alleles)	0
Number of effects	13,229
Genome total length	3,232,546,710
Genome effective length	3,031,607,288
Variant rate	1 variant every 2,225,849 bases

	-	AAA	AAC	AAG	AAT	ACA	ACC	ACG	ACT	AGA	AGC	AGG	AGT	ATA	ATC	ATG	ATT	CAA	CAC	CAG	CAT	CCA	CCC	CCG	CCT	CGA	CGC	CGG	CGT	CTA	CTC	CTG	CTT	GAA	GAC	GAG	GAT	GCA	GCC	GCG	GCT	GGA	GGC	GGG	GGT	GTA	GTC	GTG	GTT	TAA	TAC	TAG	TAT	TCA	TCC	TCG	TCT	TGA	TGC	TGG	TGT	TTA	TTC	TTG	TTT
-		7	3	12	9	4	14	37	14	1	30	1	24	49	7	43	27	8	35	13	21	21	27	21	9	21	8	27	11	18	6	16	19	26	21	10	24	30	28	39	42	18	34	16	5	21	27	2		12	59	26	4	22	26	7	18	28	16	42	28	52	28	3	34
AAA	12	6		10																														19																1
AAC	3			3	49		4				1															2																									2
AAG	42	2	7		3			2								10				14																																7
AAT	7	12	2														5
ACA					16
ACC	1																						17																											3
ACG
ACT					2			4
AGA	4	2								11			2	1
AGC	17		2							4					3												1
AGG	2
AGT	23										7																																																		10
ATA	3	4				12
ATC	21						2			9							18
ATG	1	6										1			27	1
ATT	7	5			1
CAA	3
CAC			10															9									19																								24
CAG	57																		30		11							11
CAT																			5	3													10
CCA	26					11												2				12				1
CCC	4																							13
CCG
CCT	24																				1	15		1									3
CGA																						12						12
CGC	1																																																										1
CGG	4
CGT																					2																																								27
CTA	22																					27
CTC	11																				1									6																																	9
CTG	63																						1	1								8	2															16
CTT	45																	1												9	2
GAA	19																																			27		8				2
GAC	2																		1															2			10										1				1
GAG	50			1																8												6					5							3				16
GAT	21																																																				8
GCA	11
GCC	21																																		3						1
GCG	17																							2																				1												9
GCT	5																		5						1													27	3								4
GGA	24																									12																				4
GGC	11																																			6						5															14		2
GGG	19																																										4
GGT	5																																								2
GTA	1																																															4	5
GTC	14																																	1												2
GTG	42																																			8				9				5																				6
GTT	8																																														33
TAA
TAC	5																		1																																3		1
TAG																																																			1
TAT	17																											1																								4									2
TCA	12																																																					16									16
TCC	27																																																									5	5
TCG	8
TCT	14							1																																	5												11		1
TGA
TGC	1																																																		2									14				2
TGG	3																											2																																	3
TGT	9																																																				8
TTA	13
TTC	23																														1
TTG	15																															5																																6
TTT	5																1															9	6

	*	-	?	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
*																							1
-	66		204	139	44	45	36	62	73	56	83	19	114	43	12	78	21	69	127	69	50	42	63
?
A		54		31		3			1	5						3			9		4
C		10											2									14	10
D		23				10	2			1											1		9
E		69		8		5	27		5			1	6				8				16
F		28									1		16
G		59		2	2		6		9									12	14		4
H										5			10		10		12	19					24
I		31									18	9			1			9		14
K	8	54					19					18		10	10		14			2
L		169						9		1			38			29	1				16
M		1									27	6		1				1
N		10									5	15			51			2	1	4			2
P		54								1			3			41	2	1		11
Q		60								41								11
R		11			28					2	1	2				12		23	2
S	5	101		5	15			16			3				2			5	24	1			11
T	3	1													18	17				4
V		65		9			9		5				6								44
W		3			3													2
Y	4	22			2					1								1					4

	-	AAA	AAC	AAG	AAT	ACA	ACC	ACG	ACT	AGA	AGC	AGG	AGT	ATA	ATC	ATG	ATT	CAA	CAC	CAG	CAT	CCA	CCC	CCG	CCT	CGA	CGC	CGG	CGT	CTA	CTC	CTG	CTT	GAA	GAC	GAG	GAT	GCA	GCC	GCG	GCT	GGA	GGC	GGG	GGT	GTA	GTC	GTG	GTT	TAA	TAC	TAG	TAT	TCA	TCC	TCG	TCT	TGA	TGC	TGG	TGT	TTA	TTC	TTG	TTT
-		7	3	12	9	4	14	37	14	1	30	1	24	49	7	43	27	8	35	13	21	21	27	21	9	21	8	27	11	18	6	16	19	26	21	10	24	30	28	39	42	18	34	16	5	21	27	2		12	59	26	4	22	26	7	18	28	16	42	28	52	28	3	34
AAA	12	6		10																														19																1
AAC	3			3	49		4				1															2																									2
AAG	42	2	7		3			2								10				14																																7
AAT	7	12	2														5
ACA					16
ACC	1																						17																											3
ACG
ACT					2			4
AGA	4	2								11			2	1
AGC	17		2							4					3												1
AGG	2
AGT	23										7																																																		10
ATA	3	4				12
ATC	21						2			9							18
ATG	1	6										1			27	1
ATT	7	5			1
CAA	3
CAC			10															9									19																								24
CAG	57																		30		11							11
CAT																			5	3													10
CCA	26					11												2				12				1
CCC	4																							13
CCG
CCT	24																				1	15		1									3
CGA																						12						12
CGC	1																																																										1
CGG	4
CGT																					2																																								27
CTA	22																					27
CTC	11																				1									6																																	9
CTG	63																						1	1								8	2															16
CTT	45																	1												9	2
GAA	19																																			27		8				2
GAC	2																		1															2			10										1				1
GAG	50			1																8												6					5							3				16
GAT	21																																																				8
GCA	11
GCC	21																																		3						1
GCG	17																							2																				1												9
GCT	5																		5						1													27	3								4
GGA	24																									12																				4
GGC	11																																			6						5															14		2
GGG	19																																										4
GGT	5																																								2
GTA	1																																															4	5
GTC	14																																	1												2
GTG	42																																			8				9				5																				6
GTT	8																																														33
TAA
TAC	5																		1																																3		1
TAG																																																			1
TAT	17																											1																								4									2
TCA	12																																																					16									16
TCC	27																																																									5	5
TCG	8
TCT	14							1																																	5												11		1
TGA
TGC	1																																																		2									14				2
TGG	3																											2																																	3
TGT	9																																																				8
TTA	13
TTC	23																														1
TTG	15																															5																																6
TTT	5																1															9	6

	*	-	?	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
*																							1
-	66		204	139	44	45	36	62	73	56	83	19	114	43	12	78	21	69	127	69	50	42	63
?
A		54		31		3			1	5						3			9		4
C		10											2									14	10
D		23				10	2			1											1		9
E		69		8		5	27		5			1	6				8				16
F		28									1		16
G		59		2	2		6		9									12	14		4
H										5			10		10		12	19					24
I		31									18	9			1			9		14
K	8	54					19					18		10	10		14			2
L		169						9		1			38			29	1				16
M		1									27	6		1				1
N		10									5	15			51			2	1	4			2
P		54								1			3			41	2	1		11
Q		60								41								11
R		11			28					2	1	2				12		23	2
S	5	101		5	15			16			3				2			5	24	1			11
T	3	1													18	17				4
V		65		9			9		5				6								44
W		3			3													2
Y	4	22			2					1								1					4

	-	AAA	AAC	AAG	AAT	ACA	ACC	ACG	ACT	AGA	AGC	AGG	AGT	ATA	ATC	ATG	ATT	CAA	CAC	CAG	CAT	CCA	CCC	CCG	CCT	CGA	CGC	CGG	CGT	CTA	CTC	CTG	CTT	GAA	GAC	GAG	GAT	GCA	GCC	GCG	GCT	GGA	GGC	GGG	GGT	GTA	GTC	GTG	GTT	TAA	TAC	TAG	TAT	TCA	TCC	TCG	TCT	TGA	TGC	TGG	TGT	TTA	TTC	TTG	TTT
-		7	3	12	9	4	14	37	14	1	30	1	24	49	7	43	27	8	35	13	21	21	27	21	9	21	8	27	11	18	6	16	19	26	21	10	24	30	28	39	42	18	34	16	5	21	27	2		12	59	26	4	22	26	7	18	28	16	42	28	52	28	3	34
AAA	12	6		10																														19																1
AAC	3			3	49		4				1															2																									2
AAG	42	2	7		3			2								10				14																																7
AAT	7	12	2														5
ACA					16
ACC	1																						17																											3
ACG
ACT					2			4
AGA	4	2								11			2	1
AGC	17		2							4					3												1
AGG	2
AGT	23										7																																																		10
ATA	3	4				12
ATC	21						2			9							18
ATG	1	6										1			27	1
ATT	7	5			1
CAA	3
CAC			10															9									19																								24
CAG	57																		30		11							11
CAT																			5	3													10
CCA	26					11												2				12				1
CCC	4																							13
CCG
CCT	24																				1	15		1									3
CGA																						12						12
CGC	1																																																										1
CGG	4
CGT																					2																																								27
CTA	22																					27
CTC	11																				1									6																																	9
CTG	63																						1	1								8	2															16
CTT	45																	1												9	2
GAA	19																																			27		8				2
GAC	2																		1															2			10										1				1
GAG	50			1																8												6					5							3				16
GAT	21																																																				8
GCA	11
GCC	21																																		3						1
GCG	17																							2																				1												9
GCT	5																		5						1													27	3								4
GGA	24																									12																				4
GGC	11																																			6						5															14		2
GGG	19																																										4
GGT	5																																								2
GTA	1																																															4	5
GTC	14																																	1												2
GTG	42																																			8				9				5																				6
GTT	8																																														33
TAA
TAC	5																		1																																3		1
TAG																																																			1
TAT	17																											1																								4									2
TCA	12																																																					16									16
TCC	27																																																									5	5
TCG	8
TCT	14							1																																	5												11		1
TGA
TGC	1																																																		2									14				2
TGG	3																											2																																	3
TGT	9																																																				8
TTA	13
TTC	23																														1
TTG	15																															5																																6
TTT	5																1															9	6

	*	-	?	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
*																							1
-	66		204	139	44	45	36	62	73	56	83	19	114	43	12	78	21	69	127	69	50	42	63
?
A		54		31		3			1	5						3			9		4
C		10											2									14	10
D		23				10	2			1											1		9
E		69		8		5	27		5			1	6				8				16
F		28									1		16
G		59		2	2		6		9									12	14		4
H										5			10		10		12	19					24
I		31									18	9			1			9		14
K	8	54					19					18		10	10		14			2
L		169						9		1			38			29	1				16
M		1									27	6		1				1
N		10									5	15			51			2	1	4			2
P		54								1			3			41	2	1		11
Q		60								41								11
R		11			28					2	1	2				12		23	2
S	5	101		5	15			16			3				2			5	24	1			11
T	3	1													18	17				4
V		65		9			9		5				6								44
W		3			3													2
Y	4	22			2					1								1					4